SeattleSeq Annotation 151
  

Input Variation List File for Annotation

use reference NCBI 38/hg38
annotations for the NCBI gene model will be returned
enter e-mail address:
input file format:
(SNVs only unless otherwise indicated)
VCF SNVs and Indels (SNVs and/or indels)
  specify output file format:
SeattleSeq (tabular) file format
VCF file format
Maq
GFF3
custom
one genotype per line
GATK bed (indels only)
add more annotation:
Alleles Submitted
Alleles in dbSNP
Conservation Score GERP
CADD C Score non-commercial applications only
Chimp Allele
Genes
dbSNP Validation
Repeats
Protein Accession
cDNA Position
PolyPhen:
Clinical Association
Distance To Nearest Splice Site
microRNAs
Grantham Score
KEGG Pathways
CpG Islands
NHLBI ESP Allele Counts
split ESP Afr/Eur
ExAC Allele Counts
split ExAC Afr/Eur/Asn
Protein-Protein Interactions


or

Input Annotation File for Table Display

does not yet support VCF-in-VCF-out or one-genotype-per-line


or

Input One SNV

chromosome (1-22, X, Y):
hg38 genomic location:
first allele (A, C, G, T):
second allele (A, C, G, T):


or

Input One Indel

(VCF convention)
chromosome (1-22, X, Y):
hg38 genomic location:
reference allele(s):
alternate allele(s):

SeattleSeq Annotation was most recently updated August 17, 2018. The current version is 14.00.
August 17, 2018 -- The dbSNP build is now 151. Variations mapped to hg38 are again required. ... more
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