SeattleSeq Annotation 154
Sponsored by SeattleSNPs and SeattleSeq     
  
About SeattleSeq Annotation
How to Use
Build Notes
Download Example Input Files
SeattleSeq Ann. 138 (hg19)
Contact Us

Input Variation List File for Annotation
use reference NCBI 38/hg38
annotations for the NCBI gene model will be returned
enter e-mail address:
input file format:
(SNVs only unless otherwise indicated)
VCF SNVs and Indels (SNVs and/or indels)
  specify output file format:
SeattleSeq (tabular) file format
VCF file format
Maq
GFF3
custom
one genotype per line
GATK bed (indels only)
add more annotation:
Alleles Submitted
Alleles in dbSNP
Conservation Score GERP
CADD C Score non-commercial applications only
Chimp Allele
Genes
dbSNP Validation
Repeats
Protein Accession
cDNA Position
PolyPhen:
Clinical Association
Distance To Nearest Splice Site
microRNAs
Grantham Score
KEGG Pathways
CpG Islands
NHLBI ESP Allele Counts
split ESP Afr/Eur
ExAC Allele Counts
split ExAC Afr/Eur/Asn
Protein-Protein Interactions


or

Input Annotation File for Table Display
does not yet support VCF-in-VCF-out or one-genotype-per-line


or

Input One SNV
chromosome (1-22, X, Y):
hg38 genomic location:
first allele (A, C, G, T):
second allele (A, C, G, T):


or

Input One Indel
(VCF convention)
chromosome (1-22, X, Y):
hg38 genomic location:
reference allele(s):
alternate allele(s):

SeattleSeq Annotation was most recently updated May 9, 2022. The current version is 16.01.
This site is being maintained with minimal technical support, and is scheduled to be shut down July 1, 2023. We recommend switching to another annotation service such as VEP.
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