SeattleSeq Annotation 154

Input Variation List File for Annotation

use reference NCBI 38/hg38
annotations for the NCBI gene model will be returned
enter e-mail address:
input file format:
(SNVs only unless otherwise indicated)
VCF SNVs and Indels (SNVs and/or indels)
  specify output file format:
SeattleSeq (tabular) file format
VCF file format
one genotype per line
GATK bed (indels only)
add more annotation:
Alleles Submitted
Alleles in dbSNP
Conservation Score GERP
CADD C Score non-commercial applications only
Chimp Allele
dbSNP Validation
Protein Accession
cDNA Position
Clinical Association
Distance To Nearest Splice Site
Grantham Score
KEGG Pathways
CpG Islands
NHLBI ESP Allele Counts
split ESP Afr/Eur
ExAC Allele Counts
split ExAC Afr/Eur/Asn
Protein-Protein Interactions


Input Annotation File for Table Display

does not yet support VCF-in-VCF-out or one-genotype-per-line


Input One SNV

chromosome (1-22, X, Y):
hg38 genomic location:
first allele (A, C, G, T):
second allele (A, C, G, T):


Input One Indel

(VCF convention)
chromosome (1-22, X, Y):
hg38 genomic location:
reference allele(s):
alternate allele(s):

SeattleSeq Annotation was most recently updated May 9, 2022. The current version is 16.01.
This site is being maintained with minimal technical support, and is scheduled to be shut down July 1, 2023. We recommend switching to another annotation service such as VEP.
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